3D structure

PDB id
3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
AUUUGAGC*GUUCUUUU
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBO|1|AA|A|186
3JBO|1|AA|U|187
3JBO|1|AA|U|188
3JBO|1|AA|U|189
3JBO|1|AA|G|190
3JBO|1|AA|A|191
3JBO|1|AA|G|192
3JBO|1|AA|C|193
*
3JBO|1|AA|G|238
3JBO|1|AA|U|239
3JBO|1|AA|U|240
3JBO|1|AA|C|241
3JBO|1|AA|U|242
3JBO|1|AA|U|243
3JBO|1|AA|U|244
3JBO|1|AA|U|245

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AC
5.8S ribosomal RNA; 5.8S rRNA
Chain AF
60S ribosomal protein uL4
Chain AL
60S ribosomal protein eL13
Chain AZ
60S ribosomal protein uL24
Chain Ac
60S ribosomal protein eL37

Coloring options:

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