IL_3JBO_229

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_229 not in the Motif Atlas

Geometric match to IL_8AF0_002

Geometric discrepancy: 0.2429

The information below is about IL_8AF0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

3JBO|1|AA|G|199
3JBO|1|AA|A|200
3JBO|1|AA|G|201
*
3JBO|1|AA|C|210
3JBO|1|AA|U|211
3JBO|1|AA|U|212

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein eL32

Chain AF

60S ribosomal protein uL4

Chain AZ

60S ribosomal protein uL24