IL_3JBO_231
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AUUUA*UAUUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_231 not in the Motif Atlas
- Geometric match to IL_8S95_002
- Geometric discrepancy: 0.3324
- The information below is about IL_8S95_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3JBO|1|AA|A|523
3JBO|1|AA|U|524
3JBO|1|AA|U|525
3JBO|1|AA|U|526
3JBO|1|AA|A|527
*
3JBO|1|AA|U|628
3JBO|1|AA|A|629
3JBO|1|AA|U|630
3JBO|1|AA|U|631
3JBO|1|AA|U|632
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein uL30
- Chain AF
- 60S ribosomal protein uL4
- Chain AI
- 60S ribosomal protein eL6
- Chain AU
- 60S ribosomal protein eL20
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