IL_3JBP_044
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UGGG*UAA
- Length
- 7 nucleotides
- Bulged bases
- 3JBP|1|A|G|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_044 not in the Motif Atlas
- Geometric match to IL_5T3K_001
- Geometric discrepancy: 0.1906
- The information below is about IL_5T3K_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
3JBP|1|A|U|943
3JBP|1|A|G|944
3JBP|1|A|G|945
3JBP|1|A|G|946
*
3JBP|1|A|U|1020
3JBP|1|A|A|1021
3JBP|1|A|A|1022
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain A6
- 60S ribosomal protein eL30
- Chain B
- 40S ribosomal protein eS1
- Chain U
- 40S ribosomal protein uS15
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