IL_3JBP_046
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- AUGUCAG*CUUAGAUUUU
- Length
- 17 nucleotides
- Bulged bases
- 3JBP|1|A|A|982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_046 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.1843
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
3JBP|1|A|A|962
3JBP|1|A|U|963
3JBP|1|A|G|964
3JBP|1|A|U|965
3JBP|1|A|C|966
3JBP|1|A|A|967
3JBP|1|A|G|968
*
3JBP|1|A|C|979
3JBP|1|A|U|980
3JBP|1|A|U|981
3JBP|1|A|A|982
3JBP|1|A|G|983
3JBP|1|A|A|984
3JBP|1|A|U|985
3JBP|1|A|U|986
3JBP|1|A|U|987
3JBP|1|A|U|988
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- 40S ribosomal protein eS1
- Chain P
- 40S ribosomal protein uS11
Coloring options: