IL_3JBP_055

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_055 not in the Motif Atlas

Geometric match to IL_4KNQ_002

Geometric discrepancy: 0.1597

The information below is about IL_4KNQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3JBP|1|A|C|1274
3JBP|1|A|U|1275
3JBP|1|A|U|1276
*
3JBP|1|A|G|1710
3JBP|1|A|U|1711
3JBP|1|A|G|1712

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein uS9

Chain S

40S ribosomal protein uS13

Chain Y

40S ribosomal protein eS19