IL_3JBP_111

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UAA*UUUA

Length

7 nucleotides

Bulged bases

3JBP|1|AA|U|893

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_111 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.3163

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3JBP|1|AA|U|879
3JBP|1|AA|A|880
3JBP|1|AA|A|881
*
3JBP|1|AA|U|892
3JBP|1|AA|U|893
3JBP|1|AA|U|894
3JBP|1|AA|A|895

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AS

60S ribosomal protein eL18

Chain Ai

60S ribosomal protein eL44