IL_3JBP_138

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAGA*UUAGAAUC

Length

13 nucleotides

Bulged bases

3JBP|1|AA|A|1503, 3JBP|1|AA|U|1505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|G|1475
3JBP|1|AA|A|1476
3JBP|1|AA|A|1479
3JBP|1|AA|G|1480
3JBP|1|AA|A|1481
*
3JBP|1|AA|U|1499
3JBP|1|AA|U|1500
3JBP|1|AA|A|1501
3JBP|1|AA|G|1502
3JBP|1|AA|A|1503
3JBP|1|AA|A|1504
3JBP|1|AA|U|1505
3JBP|1|AA|C|1506

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein eL28

Chain A8

60S ribosomal protein eL32

Chain AF

60S ribosomal protein uL4

Chain AI

60S ribosomal protein eL6

Chain AS

60S ribosomal protein eL18