IL_3JBP_146

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_146 not in the Motif Atlas

Geometric match to IL_5J7L_326

Geometric discrepancy: 0.1531

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

3JBP|1|AA|A|1768
3JBP|1|AA|U|1769
3JBP|1|AA|G|1770
*
3JBP|1|AA|C|2082
3JBP|1|AA|U|2083
3JBP|1|AA|U|2084

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ad

60S ribosomal protein eL38