IL_3JBP_150

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UCGG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_150 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2664

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3JBP|1|AA|U|1826
3JBP|1|AA|C|1827
3JBP|1|AA|G|1828
3JBP|1|AA|G|1829
*
3JBP|1|AA|C|1996
3JBP|1|AA|G|1997
3JBP|1|AA|A|1998
3JBP|1|AA|A|1999

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AX

60S ribosomal protein eL22

Chain Aa

60S ribosomal protein eL34

Chain Ad

60S ribosomal protein eL38