IL_3JBP_169

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_169 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.4563

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

3JBP|1|AA|G|2499
3JBP|1|AA|A|2500
3JBP|1|AA|A|2501
3JBP|1|AA|U|2502
3JBP|1|AA|G|2503
*
3JBP|1|AA|C|2528
3JBP|1|AA|G|2529
3JBP|1|AA|C|2530

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AD

60S ribosomal protein uL2