IL_3JBP_231

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUUUGAGC*GUUCUUUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|A|186
3JBP|1|AA|U|187
3JBP|1|AA|U|188
3JBP|1|AA|U|189
3JBP|1|AA|G|190
3JBP|1|AA|A|191
3JBP|1|AA|G|192
3JBP|1|AA|C|193
*
3JBP|1|AA|G|238
3JBP|1|AA|U|239
3JBP|1|AA|U|240
3JBP|1|AA|C|241
3JBP|1|AA|U|242
3JBP|1|AA|U|243
3JBP|1|AA|U|244
3JBP|1|AA|U|245

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

60S ribosomal protein uL4

Chain AL

60S ribosomal protein eL13

Chain AZ

60S ribosomal protein uL24

Chain Ac

60S ribosomal protein eL37