IL_3JBU_013

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UAGUA*UAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_013 not in the Motif Atlas

Homologous match to IL_6CZR_124

Geometric discrepancy: 0.2743

The information below is about IL_6CZR_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38684.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3JBU|1|A|U|249
3JBU|1|A|A|250
3JBU|1|A|G|251
3JBU|1|A|U|252
3JBU|1|A|A|253
*
3JBU|1|A|U|273
3JBU|1|A|A|274
3JBU|1|A|G|275

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17