IL_3JBU_040

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AGAAG*CGGACCU

Length

12 nucleotides

Bulged bases

3JBU|1|A|A|1257, 3JBU|1|A|A|1280, 3JBU|1|A|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|A|A|1254
3JBU|1|A|G|1255
3JBU|1|A|A|1256
3JBU|1|A|A|1257
3JBU|1|A|G|1258
*
3JBU|1|A|C|1277
3JBU|1|A|G|1278
3JBU|1|A|G|1279
3JBU|1|A|A|1280
3JBU|1|A|C|1281
3JBU|1|A|C|1282
3JBU|1|A|U|1283

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14