IL_3JBU_043

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GCCCG*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_043 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.1959

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|A|G|1401
3JBU|1|A|C|1402
3JBU|1|A|C|1403
3JBU|1|A|C|1404
3JBU|1|A|G|1405
*
3JBU|1|A|C|1496
3JBU|1|A|G|1497
3JBU|1|A|U|1498
3JBU|1|A|A|1499
3JBU|1|A|A|1500
3JBU|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

mRNA

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain v

Transfer RNA; tRNA