IL_3JBU_044

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_044 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.1905

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3JBU|1|A|G|1405
3JBU|1|A|U|1406
3JBU|1|A|C|1407
*
3JBU|1|A|G|1494
3JBU|1|A|U|1495
3JBU|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

mRNA

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain v

Transfer RNA; tRNA