IL_3JBU_053

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_053 not in the Motif Atlas

Geometric match to IL_6CZR_137

Geometric discrepancy: 0.3583

The information below is about IL_6CZR_137

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

3JBU|1|a|C|30
3JBU|1|a|C|31
*
3JBU|1|a|G|51
3JBU|1|a|A|52
3JBU|1|a|A|53
3JBU|1|a|G|54

Current chains

Chain a

5S rRNA

Nearby chains

Chain f

50S ribosomal protein L5

Chain o

50S ribosomal protein L18