3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CC*GAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JBU_053 not in the Motif Atlas
Geometric match to IL_6CZR_137
Geometric discrepancy: 0.3583
The information below is about IL_6CZR_137
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
19

Unit IDs

3JBU|1|a|C|30
3JBU|1|a|C|31
*
3JBU|1|a|G|51
3JBU|1|a|A|52
3JBU|1|a|A|53
3JBU|1|a|G|54

Current chains

Chain a
5S rRNA

Nearby chains

Chain f
50S ribosomal protein L5
Chain o
50S ribosomal protein L18

Coloring options:


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