IL_3JBU_065

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

3JBU|1|b|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_065 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.5216

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3JBU|1|b|C|274
3JBU|1|b|C|275
3JBU|1|b|U|276
3JBU|1|b|G|277
3JBU|1|b|A|278
3JBU|1|b|A|279
3JBU|1|b|U|280
3JBU|1|b|C|281
*
3JBU|1|b|G|359
3JBU|1|b|U|360
3JBU|1|b|G|361
3JBU|1|b|A|362
3JBU|1|b|G|363

Current chains

Chain b

23S rRNA

Nearby chains