IL_3JBU_073

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

3JBU|1|b|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_073 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2971

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|U|702
3JBU|1|b|U|703
3JBU|1|b|G|704
3JBU|1|b|A|705
3JBU|1|b|A|706
3JBU|1|b|G|707
*
3JBU|1|b|U|724
3JBU|1|b|G|725
3JBU|1|b|G|726
3JBU|1|b|A|727
3JBU|1|b|G|728
3JBU|1|b|G|729
3JBU|1|b|A|730

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2