IL_3JBU_101

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

3JBU|1|b|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_101 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.2404

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

3JBU|1|b|C|1417
3JBU|1|b|G|1418
3JBU|1|b|A|1419
3JBU|1|b|A|1420
3JBU|1|b|G|1421
*
3JBU|1|b|C|1577
3JBU|1|b|U|1578
3JBU|1|b|A|1579
3JBU|1|b|A|1580
3JBU|1|b|G|1581

Current chains

Chain b

23S rRNA

Nearby chains