IL_3JBU_113

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

3JBU|1|b|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_113 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.1743

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3JBU|1|b|U|1712
3JBU|1|b|A|1713
3JBU|1|b|U|1714
3JBU|1|b|G|1715
3JBU|1|b|U|1716
3JBU|1|b|A|1717
3JBU|1|b|G|1718
*
3JBU|1|b|U|1742
3JBU|1|b|G|1743
3JBU|1|b|A|1744
3JBU|1|b|A|1745
3JBU|1|b|A|1746

Current chains

Chain b

23S rRNA

Nearby chains