IL_3JBU_137

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_137 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.3565

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

3JBU|1|b|U|2457
3JBU|1|b|G|2458
3JBU|1|b|A|2459
*
3JBU|1|b|U|2493
3JBU|1|b|G|2494

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16