IL_3JBU_148

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUU*ACUGC

Length

8 nucleotides

Bulged bases

3JBU|1|b|C|2712, 3JBU|1|b|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_148 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.322

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

3JBU|1|b|G|2694
3JBU|1|b|U|2695
3JBU|1|b|U|2696
*
3JBU|1|b|A|2711
3JBU|1|b|C|2712
3JBU|1|b|U|2713
3JBU|1|b|G|2714
3JBU|1|b|C|2715

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19