IL_3JBU_150

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_150 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1825

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

3JBU|1|b|C|2806
3JBU|1|b|U|2807
3JBU|1|b|G|2808
3JBU|1|b|A|2809
3JBU|1|b|A|2810
3JBU|1|b|G|2811
*
3JBU|1|b|C|2889
3JBU|1|b|G|2890
3JBU|1|b|U|2891
3JBU|1|b|G|2892

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain d

50S ribosomal protein L3

Chain s

50S ribosomal protein L22