IL_3JBU_152

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

3JBU|1|b|A|2872, 3JBU|1|b|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_152 not in the Motif Atlas

Geometric match to IL_5J7L_353

Geometric discrepancy: 0.1468

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3JBU|1|b|G|2843
3JBU|1|b|G|2844
3JBU|1|b|U|2845
3JBU|1|b|G|2846
*
3JBU|1|b|C|2870
3JBU|1|b|U|2871
3JBU|1|b|A|2872
3JBU|1|b|A|2873
3JBU|1|b|C|2874

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19