3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GUGAAAUCC*GAACUGC
Length
16 nucleotides
Bulged bases
3JBU|1|A|A|607, 3JBU|1|A|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBU|1|A|G|604
3JBU|1|A|U|605
3JBU|1|A|G|606
3JBU|1|A|A|607
3JBU|1|A|A|608
3JBU|1|A|A|609
3JBU|1|A|U|610
3JBU|1|A|C|611
3JBU|1|A|C|612
*
3JBU|1|A|G|628
3JBU|1|A|A|629
3JBU|1|A|A|630
3JBU|1|A|C|631
3JBU|1|A|U|632
3JBU|1|A|G|633
3JBU|1|A|C|634

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain H
30S ribosomal protein S8
Chain P
30S ribosomal protein S16
Chain Q
30S ribosomal protein S17

Coloring options:

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