3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
UAGAAU*GGAAUACCGGUGGCGAAGGCGG
Length
28 nucleotides
Bulged bases
3JBU|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBU|1|A|U|672
3JBU|1|A|A|673
3JBU|1|A|G|674
3JBU|1|A|A|675
3JBU|1|A|A|676
3JBU|1|A|U|677
*
3JBU|1|A|G|713
3JBU|1|A|G|714
3JBU|1|A|A|715
3JBU|1|A|A|716
3JBU|1|A|U|717
3JBU|1|A|A|718
3JBU|1|A|C|719
3JBU|1|A|C|720
3JBU|1|A|G|721
3JBU|1|A|G|722
3JBU|1|A|U|723
3JBU|1|A|G|724
3JBU|1|A|G|725
3JBU|1|A|C|726
3JBU|1|A|G|727
3JBU|1|A|A|728
3JBU|1|A|A|729
3JBU|1|A|G|730
3JBU|1|A|G|731
3JBU|1|A|C|732
3JBU|1|A|G|733
3JBU|1|A|G|734

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18
Chain U
30S ribosomal protein S21
Chain c
50S ribosomal protein L2

Coloring options:

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