3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CGUUCUGUAAGCC*GGUAUCAGAAGUG
Length
26 nucleotides
Bulged bases
3JBU|1|b|A|1205, 3JBU|1|b|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBU|1|b|C|1196
3JBU|1|b|G|1197
3JBU|1|b|U|1198
3JBU|1|b|U|1199
3JBU|1|b|C|1200
3JBU|1|b|U|1201
3JBU|1|b|G|1202
3JBU|1|b|U|1203
3JBU|1|b|A|1204
3JBU|1|b|A|1205
3JBU|1|b|G|1206
3JBU|1|b|C|1207
3JBU|1|b|C|1208
*
3JBU|1|b|G|1238
3JBU|1|b|G|1239
3JBU|1|b|U|1240
3JBU|1|b|A|1241
3JBU|1|b|U|1242
3JBU|1|b|C|1243
3JBU|1|b|A|1244
3JBU|1|b|G|1245
3JBU|1|b|A|1246
3JBU|1|b|A|1247
3JBU|1|b|G|1248
3JBU|1|b|U|1249
3JBU|1|b|G|1250

Current chains

Chain b
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20

Coloring options:

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