IL_3JBU_202

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CCAAGA*UCGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_202 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3812

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|C|2466
3JBU|1|b|C|2467
3JBU|1|b|A|2468
3JBU|1|b|A|2469
3JBU|1|b|G|2470
3JBU|1|b|A|2471
*
3JBU|1|b|U|2479
3JBU|1|b|C|2480
3JBU|1|b|G|2481
3JBU|1|b|A|2482
3JBU|1|b|C|2483
3JBU|1|b|G|2484

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain m

50S ribosomal protein L16