3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GUGAAUUCAUCUC*GAGAAUGUUAUCAC
Length
27 nucleotides
Bulged bases
3JBU|1|b|U|846, 3JBU|1|b|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBU|1|b|G|841
3JBU|1|b|U|842
3JBU|1|b|G|843
3JBU|1|b|A|844
3JBU|1|b|A|845
3JBU|1|b|U|846
3JBU|1|b|U|847
3JBU|1|b|C|848
3JBU|1|b|A|849
3JBU|1|b|U|850
3JBU|1|b|C|851
3JBU|1|b|U|852
3JBU|1|b|C|853
*
3JBU|1|b|G|924
3JBU|1|b|A|925
3JBU|1|b|G|926
3JBU|1|b|A|927
3JBU|1|b|A|928
3JBU|1|b|U|929
3JBU|1|b|G|930
3JBU|1|b|U|931
3JBU|1|b|U|932
3JBU|1|b|A|933
3JBU|1|b|U|934
3JBU|1|b|C|935
3JBU|1|b|A|936
3JBU|1|b|C|937

Current chains

Chain b
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L30
Chain 7
50S ribosomal protein L35
Chain y
50S ribosomal protein L27

Coloring options:

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