IL_3JBV_019

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

3JBV|1|A|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_019 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.3787

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3JBV|1|A|G|446
3JBV|1|A|G|447
3JBV|1|A|A|448
3JBV|1|A|G|449
3JBV|1|A|G|450
*
3JBV|1|A|C|483
3JBV|1|A|G|484
3JBV|1|A|U|485
3JBV|1|A|U|486
3JBV|1|A|A|487
3JBV|1|A|C|488

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16