IL_3JBV_038

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

3JBV|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_038 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2893

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

3JBV|1|A|C|924
3JBV|1|A|G|925
3JBV|1|A|G|926
3JBV|1|A|G|927
*
3JBV|1|A|U|1390
3JBV|1|A|U|1391
3JBV|1|A|G|1392

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain E

30S ribosomal protein S5

Chain X

RNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3')