IL_3JBV_056

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_056 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1863

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JBV|1|A|G|1405
3JBV|1|A|U|1406
3JBV|1|A|C|1407
*
3JBV|1|A|G|1494
3JBV|1|A|U|1495
3JBV|1|A|C|1496

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain V

Transfer RNA; tRNA

Chain X

RNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3')

Chain b

Large subunit ribosomal RNA; LSU rRNA