IL_3JBV_059

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_059 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1724

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3JBV|1|A|G|1416
3JBV|1|A|G|1417
3JBV|1|A|A|1418
3JBV|1|A|G|1419
*
3JBV|1|A|U|1481
3JBV|1|A|G|1482
3JBV|1|A|A|1483
3JBV|1|A|C|1484

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA