IL_3JBV_061

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUAG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_061 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3017

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

3JBV|1|A|G|1439
3JBV|1|A|U|1440
3JBV|1|A|A|1441
3JBV|1|A|G|1442
*
3JBV|1|A|C|1460
3JBV|1|A|G|1461
3JBV|1|A|C|1462

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain T

30S ribosomal protein S20

Chain p

50S ribosomal protein L19