IL_3JBV_068

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_068 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.1427

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JBV|1|b|G|24
3JBV|1|b|U|25
3JBV|1|b|G|26
3JBV|1|b|G|27
3JBV|1|b|A|28
3JBV|1|b|U|29
3JBV|1|b|G|30
*
3JBV|1|b|C|510
3JBV|1|b|U|511
3JBV|1|b|G|512
3JBV|1|b|A|513
3JBV|1|b|A|514
3JBV|1|b|A|515
3JBV|1|b|C|516

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 3

50S ribosomal protein L32

Chain q

50S ribosomal protein L20

Chain s

50S ribosomal protein L22