IL_3JBV_076

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_076 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.521

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3JBV|1|b|C|274
3JBV|1|b|C|275
3JBV|1|b|U|276
3JBV|1|b|G|277
3JBV|1|b|A|278
3JBV|1|b|A|279
3JBV|1|b|U|280
3JBV|1|b|C|281
*
3JBV|1|b|G|359
3JBV|1|b|U|360
3JBV|1|b|G|361
3JBV|1|b|A|362
3JBV|1|b|G|363

Current chains

Chain b

RNA (2903-MER)

Nearby chains