IL_3JBV_113

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

3JBV|1|b|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_113 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1414

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

3JBV|1|b|C|1417
3JBV|1|b|G|1418
3JBV|1|b|A|1419
3JBV|1|b|A|1420
3JBV|1|b|G|1421
*
3JBV|1|b|C|1577
3JBV|1|b|U|1578
3JBV|1|b|A|1579
3JBV|1|b|A|1580
3JBV|1|b|G|1581

Current chains

Chain b

RNA (2903-MER)

Nearby chains