IL_3JBV_125
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 3JBV|1|b|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBV_125 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1282
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
3JBV|1|b|C|1686
3JBV|1|b|G|1687
3JBV|1|b|U|1688
3JBV|1|b|A|1689
3JBV|1|b|A|1690
3JBV|1|b|C|1691
*
3JBV|1|b|G|1696
3JBV|1|b|G|1697
3JBV|1|b|A|1698
3JBV|1|b|G|1699
3JBV|1|b|A|1700
3JBV|1|b|A|1701
3JBV|1|b|G|1702
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S ribosomal protein L2
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