IL_3JBV_147

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

3JBV|1|b|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_147 not in the Motif Atlas

Homologous match to IL_7RQB_090

Geometric discrepancy: 0.5257

The information below is about IL_7RQB_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

3JBV|1|b|U|2401
3JBV|1|b|U|2402
3JBV|1|b|C|2403
*
3JBV|1|b|G|2414
3JBV|1|b|G|2415

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 4

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15