IL_3JBV_149

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_149 not in the Motif Atlas

Homologous match to IL_4WF9_091

Geometric discrepancy: 0.3096

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

3JBV|1|b|U|2457
3JBV|1|b|G|2458
3JBV|1|b|A|2459
*
3JBV|1|b|U|2493
3JBV|1|b|G|2494

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain m

50S ribosomal protein L16