IL_3JBV_154

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

3JBV|1|b|A|2572, 3JBV|1|b|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_154 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.158

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

3JBV|1|b|C|2512
3JBV|1|b|A|2513
*
3JBV|1|b|U|2571
3JBV|1|b|A|2572
3JBV|1|b|C|2573
3JBV|1|b|G|2574

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L11

Chain j

50S ribosomal protein L13