IL_3JBV_172

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UAGUAGGUG*CACCUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|A|U|249
3JBV|1|A|A|250
3JBV|1|A|G|251
3JBV|1|A|U|252
3JBV|1|A|A|253
3JBV|1|A|G|254
3JBV|1|A|G|255
3JBV|1|A|U|256
3JBV|1|A|G|257
*
3JBV|1|A|C|269
3JBV|1|A|A|270
3JBV|1|A|C|271
3JBV|1|A|C|272
3JBV|1|A|U|273
3JBV|1|A|A|274
3JBV|1|A|G|275

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20