IL_3JBV_174

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

3JBV|1|A|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_174 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2624

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

3JBV|1|A|U|409
3JBV|1|A|G|410
3JBV|1|A|A|411
3JBV|1|A|A|412
3JBV|1|A|G|413
3JBV|1|A|A|414
3JBV|1|A|A|415
3JBV|1|A|G|416
*
3JBV|1|A|U|427
3JBV|1|A|G|428
3JBV|1|A|U|429
3JBV|1|A|A|430
3JBV|1|A|A|431
3JBV|1|A|A|432
3JBV|1|A|G|433

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain D

30S ribosomal protein S4