IL_3JBV_175

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGAGGAAGG*UUGACGUUAC

Length

19 nucleotides

Bulged bases

3JBV|1|A|A|452, 3JBV|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|A|G|446
3JBV|1|A|G|447
3JBV|1|A|A|448
3JBV|1|A|G|449
3JBV|1|A|G|450
3JBV|1|A|A|451
3JBV|1|A|A|452
3JBV|1|A|G|453
3JBV|1|A|G|454
*
3JBV|1|A|U|479
3JBV|1|A|U|480
3JBV|1|A|G|481
3JBV|1|A|A|482
3JBV|1|A|C|483
3JBV|1|A|G|484
3JBV|1|A|U|485
3JBV|1|A|U|486
3JBV|1|A|A|487
3JBV|1|A|C|488

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16