IL_3JBV_188

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UUG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_188 not in the Motif Atlas

Homologous match to IL_4WSM_373

Geometric discrepancy: 0.3863

The information below is about IL_4WSM_373

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|V|U|50
3JBV|1|V|U|51
3JBV|1|V|G|52
*
3JBV|1|V|C|62
3JBV|1|V|G|63
3JBV|1|V|A|64

Current chains

Chain V

RNA (76-MER)

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain m

50S ribosomal protein L16