IL_3JBV_222

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UUGCACAAUGGG*CCUGAUGCA

Length

21 nucleotides

Bulged bases

3JBV|1|A|U|368, 3JBV|1|A|A|373, 3JBV|1|A|G|376, 3JBV|1|A|G|377, 3JBV|1|A|G|388, 3JBV|1|A|A|389, 3JBV|1|A|U|390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|A|U|367
3JBV|1|A|U|368
3JBV|1|A|G|369
3JBV|1|A|C|370
3JBV|1|A|A|371
3JBV|1|A|C|372
3JBV|1|A|A|373
3JBV|1|A|A|374
3JBV|1|A|U|375
3JBV|1|A|G|376
3JBV|1|A|G|377
3JBV|1|A|G|378
*
3JBV|1|A|C|385
3JBV|1|A|C|386
3JBV|1|A|U|387
3JBV|1|A|G|388
3JBV|1|A|A|389
3JBV|1|A|U|390
3JBV|1|A|G|391
3JBV|1|A|C|392
3JBV|1|A|A|393

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20