IL_3JBV_236

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

AAUCC*GGAGGUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|A|2297
3JBV|1|b|A|2298
3JBV|1|b|U|2299
3JBV|1|b|C|2300
3JBV|1|b|C|2301
*
3JBV|1|b|G|2315
3JBV|1|b|G|2316
3JBV|1|b|A|2317
3JBV|1|b|G|2318
3JBV|1|b|G|2319
3JBV|1|b|U|2320
3JBV|1|b|U|2321

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain V

Transfer RNA; tRNA

Chain a

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L4

Chain o

50S ribosomal protein L18