IL_3JBV_237

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GCUC*GCGAGC

Length

10 nucleotides

Bulged bases

3JBV|1|b|G|2576, 3JBV|1|b|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_237 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3219

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

3JBV|1|b|G|2509
3JBV|1|b|C|2510
3JBV|1|b|U|2511
3JBV|1|b|C|2512
*
3JBV|1|b|G|2574
3JBV|1|b|C|2575
3JBV|1|b|G|2576
3JBV|1|b|A|2577
3JBV|1|b|G|2578
3JBV|1|b|C|2579

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 3

50S ribosomal protein L32

Chain d

50S ribosomal protein L11

Chain z

Secretion monitor