IL_3JCD_015

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3JCD|1|A|G|801, 3JCD|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_015 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1748

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3JCD|1|A|G|674
3JCD|1|A|A|675
3JCD|1|A|A|676
3JCD|1|A|A|677
3JCD|1|A|C|678
*
3JCD|1|A|G|799
3JCD|1|A|A|800
3JCD|1|A|G|801
3JCD|1|A|A|802
3JCD|1|A|U|803
3JCD|1|A|A|804
3JCD|1|A|G|805
3JCD|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15